2023
Skálová H., Jandová, K., Balšánková T., Hadincová V., Krahulec F., Pecháčková S., Krak K., Herben T. (2023): Cations make a difference: Soil nutrient patches and fine-scale root abundance of individual species in a mountain grassland. Functional Ecology, 37(4), 915-928.
Young L.A.; Maughan P.J., Jarvis D.E., Hunt S.P., Warner H.C., Durrant K.K., Kohlert T., Curti R.N., Bertero D., Filippi G.A. (2023): A chromosome-scale reference of Chenopodium watsonii helps elucidate relationships within the North American A-genome Chenopodium species and with quinoa. The Plant Genome, e20349.
Mahelka V., Kopecky D., & Krak K. (2023): Uniparental expression of ribosomal RNA in× Festulolium grasses: a link between the genome and nucleolar dominance. Frontiers in Plant Science, 14, 1276252.
Belyayev A., Kalendar R., Josefiová J., Paštov, L., Habibi F., Mahelka V., Mandak B. & Krak, K. (2023): Telomere sequence variability in genotypes from natural plant populations: unusual block-organized double-monomer terminal telomeric arrays. BMC genomics, 24(1), 572.
Habibi F., Mosyakin S.L., Shynder O. I., Krak K., Čortan D., Filippi G.A., & Mandák, B. (2023): Chenopodium ucrainicum (Amaranthaceae), a new ‘BB’genome diploid species: karyological, cytological, and molecular evidence. Botanical Journal of the Linnean Society, boad032.
2022
Jarvis D.E., Sproul J.S, Navarro-Domínguez B., Krak K., Jaggi K., Huang Y.F., Huang T.Y., Lin C. T., Jellen E. N. Maughan P. J. (2022): Chromosome-Scale Genome Assembly of the Hexaploid Taiwanese Goosefoot "Djulis" (Chenopodium formosanum). Genome Biology and Evolution, 14: evac120.
Šmíd J., Vít P., Douda J., Krak K., Mandák B. (2022): Distribution, hybridisation and morphological variation in Alnus rohlenae (Betulaceae) an endemic species of the Balkan Peninsula. European Journal of Forest Research, 141: 641-648.
Doudová, J., Douda, J., Boublík, K. (2022). Traditional human practices protect diversity of open forests threatened by ticking nutrient time bomb. Biological Conservation, 275, 109758.
Havrdová, A., Douda, J., Doudová, J. (2022). Threats, biodiversity drivers and restoration in temperate floodplain forests related to spatial scales. Science of The Total Environment, 158743.
Herben T., Šašek J., Balšánková T., Hadincová V., Krahulec F., Krak K., Pecháčková S., Skálová H. (2022): The shape of root systems in a mountain meadow: plastic responses or species-specific architectural blueprints? New Phytologist, 235: 2223-2236. https://doi.org/10.1111/nph.18132
Belyayev A., Josefiová J., Jandová M., Kalendar R., Mahelka V., Mandák B., Krak K. (2022): The structural diversity of CACTA transposons in genomes of Chenopodium (Amaranthaceae, Caryophyllales) species: specific traits and comparison with the similar elements of angiosperms. Mobile DNA, 13(1), 1-16, https://doi.org/10.1186/s13100-022-00265-3
2021
Holeštová, A., Douda, J. (2021) Plant species over-occupancy indicates river valleys are natural corridors for migration. Plant Ecology, https://doi.org/10.1007/s11258-021-01191-9
Douda, J., Doudová, J., Holeštová, A., Boublík, K., Havrdová, A. and Slezák, M. (2021), Interplay of above- and belowground resource limitations: a competition–facilitation shift maintains species coexistence. Oikos, 130: 2122-2135 https://doi.org/10.1111/oik.08356
Mandžukovski, D., Čarni, A., Biurrun, I., Douda, J., Škvorc, Ž., Stupar, V., Slezák, M., Ćušterevska, R., Rodríguez-González, P.M., Mendías C.S., Portela-Pereira, E., Vassilev, K., Milanovič, Đ., Kavgaci, A., Iakushenko, D., Pielech, R., Jasprica, N., González del Tánago, M., Dufour, S., Šibíková M., & Šibík, J. (2021). Interpretative manual of European riparian forests and shrublands, Cyril and Methodius University in Skopje, Skopje, pp. 1-154.
Gomes Marques, I., Faria, C., Conceiçao, S.I.R., Jansson, R., Corcobado, T., Milanović, S., Laurent, Y., Bernez, I., Dufour, S., Mandák, B., Ennouni, H., Sahli, A., Ater, M., Dorado, F.J., Caperta, A.D., David, T.S., Solla, A., Rodríguez-González, P.M. (2021). Germination and seed traits in common alder (Alnus spp.): the potential contribution of rear-edge populations to ecological restoration success." Restoration Ecology: e13517. https://doi.org/10.1111/rec.13517
Mosyakin S. L. & Mandák B. (2021): (2797) Proposal to reject the name Chenopodium pallidum (Chenopodiaceae / Amaranthaceae sensu APG). Taxon 70: 206e–207.
Mahelka V., Krak K., Fehrer J., Caklová P., Nagy Nejedlá M., Čegan R., Kopecký D. and Šafář J. 2021. A Panicum-derived chromosomal segment captured by Hordeum a few million years ago preserves a set of stress related genes. PLANT JOURNAL 105: 1141–1164. https://doi.org/10.1111/tpj.15167
Krak, K., Caklová, P., Kopecký, D., Blattner, F.R. and Mahelka, V. 2021. Horizontally acquired nrDNAs persist in low amounts in host Hordeum genomes and evolve independently of native nrDNA. FRONTIERS IN PLANT SCIENCES 12: 672879. https://doi.org/10.3389/fpls.2021.672879
2020
Mosyakin S. L., Mandák B. (2020): Nomenclatural and taxonomic comments on some taxa of Chenopodiaceae of the Himalayas and Tibet/Xizang. Ukrainian Botanical Journal 77: 413–427.
Belyayev A., Josefiová J., Jandová M., Kalendar R., Mahelka V., Mandák B., Krak K. (2020): The major satellite DNA families of the diploid Chenopodium album aggregate species: arguments for and against the “library hypothesisv”. PLoS ONE 15(10): e0241206. https://doi.org/10.1371/journal.pone.0241206
Mosyakin S.L., Mandák B. (2020): Chenopodium ucrainicum (Chenopodiaceae / Amaranthaceae sensu APG), a new diploid species: a morphological description and pictorial guide. Ukrainian Botanical Journal 77: 237–248.
Mandák B., Marek M. (2020): Chenopodium giganteum D. Don. In: Lustyk P. & Doležal J. (eds.), Additamenta ad ?oram Reipublicae Bohemicae. XVII. Zprávy České botanické společnosti 55: 53–56.
Mandák B. (2020): Chenopodium ×paradoxum Mandák. In: Lustyk P. & Doležal J. (eds.), Additamenta ad ?oram Reipublicae Bohemicae. XVII. Zprávy České botanické společnosti 55: 56.
Šmíd J., Douda J., Krak K., Mandák B. (2020): Analyses of hybrid viability across a hybrid zone between two Alnus species using microsatellites and cpDNA markers. Genes 11: 770. doi:10.3390/genes11070770
Belyayev A., Josefiová J., Jandová M., Mahelka V., Krak K., Mandák B. (2020): Transposons and satellite DNA: on the origin of the major satellite DNA family in the Chenopodium genome. Mobile DNA 11: 20. https://doi.org/10.1186/s13100-020-00219-7
Rollo A., Ribeiro M. M., Costa R. L., Santos C., Clavo Z. M. P., Mandák B., Kalousová M., Vebrová H., Chuqulin E., Torres S. G., Aguilar R. M. V., Hlavsa T., Lojka B. (2020): Genetic structure and pod morphology of Inga edulis cultivated vs. wild populations from the Peruvian Amazon. Forests 11: 655. doi:10.3390/f11060655
Douda J., Havrdová A., Janda P., Mandák B. (2020): Molecular assessment of natural disturbance regime in a temperate swamp forest. Forest Ecology and Management 460: 117812.
Vít P., Krak K., Douda J., Mandák B. (2020): Microsatellite markers for Anthericum ramosum (Agavaceae): Development, characterisation and cross-species amplification. Applications in Plant Sciences 8: e11323.
Krak K., Vít P., Douda J., Mandák B. (2020): Development of 18 microsatellite markers for Salvia pratensis (Lamiaceae). Applications in Plant Sciences 8: e11316.
Douda J., Doudová J., Hodková E., Vít P., Krak K., Mandák B. (2020): Population history explains the performance of an annual herb – Within and beyond its European species range. Journal of Ecology 108: 958–968.
Herben T., Balšánková T., Hadincová V., Krahulec F., Pecháčková S., Skálová H., and Krak K.. 2020. Fine-scale root community structure in the field: Species aggregations change with root density. JOURNAL OF ECOLOGY 108: 1738 –1749.
Doudová, J., & Douda, J. (2020). Along with the intraspecific functional trait variation, individual performance is key to resolving community assembly processes. Functional Ecology, 34 (11), 2362–2374.
Miljković, D., & Čortan, D. (2020). Morphometric and morphological analysis of Populus nigra L. leaves in flooded regions. Šumarski list, 144(3-4), 139-147.
2019
Štorchová H., Hubáčková H., Abeyawardana O. A. J., Walterová J., Vondráková Z., Eliášová K., Mandák B. (2019): Chenopodium ficifolium flowers under long days without upregulation of FLOWERING LOCUS T (FT) homologs. Planta 250: 2111–2125.
Čortan D., Krak K., Vít P., Mandák B. (2019): Development, characterization, and cross-amplification of 17 microsatellite markers for Filipendula vulgaris. Applications in Plant Sciences 7: e11307.
Chládová A., Kalousová M., Mandák B., Kehlenbeck K., Prinz K., Šmíd J., Van Damme P. & Lojka B. (2019): Genetic diversity and structure of baobab (Adansonia digitata L.) in south-eastern Kenya. Royal Society Open Science 6: 190854.
Hodková E., Doudová J., Douda J., Krak K. & Mandák B. (2019): On the road: Postglacial history and recent expansion of the annual Atriplex tatarica in Europe. Journal of Biogeography 46: 2609–2621.
Belyayev A., Josefiová J., Jandová M., Kalendar R., Krak K., Mandák B. (2019): Natural History of a Satellite DNA Family: From the ancestral genome component to species-specific sequences, concerted and non-concerted evolution. International Journal of Molecular Sciences 20: 1201.
Krak K., Habibi F., Douda J., Vít P., Lomonosova M. N., Wang L., Mandák B. (2019): Human-mediated dispersal of weed species during the Holocene: A case study of Chenopodium album agg. Journal of Biogeography 46: 1007–1019.
Mandák B. (2019): Chenopodium, merlík. – In: Kaplan Z., Danihelka J., Chrtek J. jun., Kirschner J., Kubát K., Štech M. & Štěpánek J. (eds): Klíč ke květeně České republiky [Key to the Flora of the Czech Republic]. Ed. 2., pp. 733–739, Academia, Praha.
Mandák B. (2019): Atriplex, lebeda. – In: Kaplan Z., Danihelka J., Chrtek J. jun., Kirschner J., Kubát K., Štech M. & Štěpánek J. (eds): Klíč ke květeně České republiky [Key to the Flora of the Czech Republic]. Ed. 2., pp. 740–744, Academia, Praha.
Mandák B. & Pyšek P. (2019): Reynoutria, křídlatka. – In: Kaplan Z., Danihelka J., Chrtek J. jun., Kirschner J., Kubát K., Štech M. & Štěpánek J. (eds): Klíč ke květeně České republiky [Key to the Flora of the Czech Republic]. Ed. 2., pp. 688–690, Academia, Praha.
Nemečková H., Krak K., and J. Chrtek Jr. 2019. Complex pattern of ploidal and genetic variation in Seseli libanotis (Apiaceae). ANNALES BOTANICI FENNICI 56: 57–77.
Kabátová K. N., Kolář F., Jarolímová V., Krak K., and Chrtek J.. 2019. Does geography, evolutionary history or ecology drive ploidy and genome size variation in the Minuartia verna group (Caryophyllaceae) across Europe? PLANT SYSTEMATICS AND EVOLUTION 305: 1019–1040.
Chytrý M., Hájek M., Kočí M., Pešout P., Roleček J., Sádlo J., Šumberová K., Sychra J., Boublík K., Douda J., … & Chobot K. (2019). Red list of habitats of the Czech Republic. Ecological Indicators, 106, 105446.
2018
Mandák B., Lomonosova M. N. & Mosyakin S. L. (2018): Chenopodium luteorubrum (Chenopodiaceae/Amaranthaceae sensu APG): a remarkable new species from the Russian Far East. Phytotaxa 382: 102–112.
Mosyakin S. L. & Mandák B. (2018): (2658) Proposal to reject the name Atriplex bengalensis (Chenopodium bengalense) (Chenopodiaceae / Amaranthaceae sensu APG). Taxon, in press.
Mosyakin S. L. & Mandák B. (2018): (2659) Proposal to conserve the name Chenopodium giganteum (Chenopodiaceae / Amaranthaceae sensu APG) with a conserved type. Taxon, in press.
Mandák B., Krak K., Vít P., Lomonosova M. N., Belyayev A., Habibi F., Wang L., Douda J. & Štorchová H. (2018): Hybridization and polyploidization within the Chenopodium album aggregate analysed by means of cytological and molecular markers. Molecular Phylogenetics and Evolution 129: 189–201.
Douda J., Havrdová A., Doudová J. & Mandák B. (2018): Legacy of postglacial colonisation affects ß-diversity: Insights into local community assembly processes. Journal of Biogeography 45: 1604–1615.
Habibi F., Vít P., Rahiminejad M., Mandák B. (2018): Towards a better understanding of the Chenopodium album aggregate in the Middle East: a karyological, cytometric and morphometric investigation. Journal of Systematics and Evolution 56: 231–242.
Hodková E. & Mandák B. (2018): An overlooked hybrid between the two diploid Chenopodium species in Central Europe determined by microsatellite and morphological analysis. Plant Systematics and Evolution 304: 295g–312.
Herben T., Vozábová T., Hadincová V., Krahulec F., Mayerová H., Pecháčková S., Skálová H., & Krak K. (2018): Vertical root distribution of individual species in a mountain grassland community: Does it respond to neighbours? Journal of Ecology 106:1083–1095.
Douda J., Doudová J., Hulík J., Havrdová A. & Boublík K. (2018): Reduced competition enhances community temporal stability under conditions of increasing environmental stress. Ecology 99: 2207–2216.
Macková L., Vít P., Urfus T. (2018): Crop-to-wild hybridization in cherries–Empirical evidence from Prunus fruticosa. Evolutionary Applications 11: 1748-1759.
2017
Mahelka V., Krak K., Kopecký D., Fehrer J., Šafář J., Bartoš J., Hobza R., Blavet N. & Blattner F. R. (2017): Multiple horizontal transfers of nuclear ribosomal genes between phylogenetically distinct grass lineages. Proceedings of the National Academy of Sciences of the United States of America, 114: 1726–1731.
Kondrysová E., Krak K. & Mandák B. (2017): Development, characterization and cross-amplification of 16 microsatellite primers for Atriplex tatarica (Amaranthaceae). Applications in Plant Sciences 5(11): 700094.
Šmíd J., Kalousová M., Mandák B., Houška J., Chládová A., Pinedo M. & Lojka B. (2017): Morphological and genetic diversity of camu-camu [Myrciaria dubia (Kunth) McVaugh] in the Peruvian Amazon. PLoS ONE 12(6): e0179886.
Doudová J., Douda J. & Mandák B. (2017): The complexity underlying invasiveness precludes the identification of invasive traits: a comparative study of invasive and non-invasive heterocarpic Atriplex congeners. PLoS ONE 12(4): e0176455.
Vít P., Douda J., Krak K., Havrdová A. & Mandák B. (2017): Two new polyploid species closely related to Alnus glutinosa in Europe and North Africa – An analysis based on morphometry, karyology, flow cytometry and microsatellites. Taxon 66: 567–583.
Douda J., Boublík K., Doudová J. & Kyncl M. (2017): Traditional forest management practices stop forest succession and bring back rare plant species. Journal of Applied Ecology 54: 761–771.
Hulík J. & Douda J. (2017): Germination strategies of two dominant Carex species in a swamp alder forest: implications for restoration. Biologia 72: 370–377.
Macková L., Vít P., Ďurišová Ľ., Eliáš jun. P. & Urfus T. (2017): Hybridization success is largely limited to homoploid Prunus hybrids – a multidisciplinary approach. Plant Systematics and Evolution 303: 481–495.
Vít P., Douda J., Krak K., Havrdová A. & Mandák B. (2017): Two new tree polyploid species closely related to Alnus glutinosa in Europe and North Africa – an analyses based on morphometry, karyology, flow cytometry and microsatellites. Taxon, in press.
Mahelka V., Krak K., Kopecký D., Fehrer J., Šafář J., Bartoš J., Hobza R., Blavet N. & Blattner F. R. (2017): Multiple horizontal transfers of nuclear ribosomal genes between phylogenetically distinct grass lineages. Proceedings of the National Academy of Sciences of the United States of America, 114: 1726–1731.
Doudová J., Douda J. & Mandák B. (2017): The complexity underlying invasiveness precludes the identification of invasive traits: a comparative study of invasive and non-invasive heterocarpic Atriplex congeners. PLoS ONE 12(4): e0176455. https://doi.org/10.1371/journal.pone.0176455
2016
Mandák B., Krak K., Vít P., Pavlíková Z., Lomonosova M. N., Habibi F., Lei W., Jellen E. N. & Douda J. (2016): How genome size variation is linked with evolution within Chenopodium sensu lato. Perspectives in Plant Ecology, Evolution and Systematics 23: 18–32.
Vít P., Krak K., Trávníček P., Douda J., Lomonosova M. N. & Mandák B. (2016): Genome size stability across Eurasian Chenopodium species (Amaranthaceae). Botanical Journal of the Linnean Society 182: 637–649.
Douda J., Boublík K., Doudová J. &, Kyncl M. (2016): Traditional forest management practices stop forest succession and bring back rare plant species. Journal of Applied Ecology doi: 10.1111/1365-2664.12801.
Krak K., Vít P., Belyayev A., Douda J., Hreusová L. & Mandák B. (2016): Allopolyploid origin of Chenopodium album s. str. (Chenopodiaceae): A molecular and cytogenetic insight. PLoS ONE 11(8): e0161063. doi:10.1371/journal.pone.0161063
Douda J., Boublík K., Slezák M., Biurrun I., Nociar J., Havrdová A., Doudová J., Aćić S., Brisse H., Brunet J., Chytrý M., Claessens H., Csiky J., Didukh Y., Dimopoulos P., Dullinger S., FitzPatrick Ú., Guisan A., Horchler P.J., Hrivnák R., Jandt U., Kącki Z., Kevey B., Landucci F., Lecomte H., Lenoir J., Paal J., Paternoster D., Pauli H., Pielech R., Rodwell J.S., Roelandt B., Svenning J.-C., Šibík J., Šilc U., Škvorc Ž., Tsiripidis I., Tzonev R.T., Wohlgemuth T., Zimmermann N.E. (2016), Vegetation classification and biogeography of European floodplain forests and alder carrs. Applied Vegetation Science 19: 147–163.
Mandák B., Vít P., Krak K., Trávníček P., Drašnarová A., Hadincová V., Zákravský P., Jarolímová V., Bacles C.F.E. & Douda J. (2016): Flow cytometry, microsatellites and niche models reveal the origins and geographic structure of Alnus glutinosa populations in Europe. Annals of Botany 117: 107–120.
Mandák B., Havrdová A., Krak K., Hadincová V., Vít P., Zákravský P. & Douda J. (2016): Recent similarity in distribution ranges does not mean a similar postglacial history: a phylogeographical study of the boreal tree species Alnus incana based on microsatellite and chloroplast DNA variation. New Phytologist 210: 1395–1407.
Rollo A., Lojka B., Honys D., Mandák B., Chia Wong J.A., Santos C., Costa R., Quintela-Sabarís C. & Ribiero M.M. (2016): Genetic diversity and hybridization in the two species Inga ingoides and I. edulis: potential applications for agroforestry in the Peruvian Amazon. Annals of Forest Science, DOI: 10.1007/s13595–015–0535–0.
2015
Havrdová A., Douda J., Doudová J. (2015), Local topography affects seed bank successional patterns in alluvial meadows. Flora-Morphology, Distribution, Functional Ecology of Plants 217: 155–163.
Havrdová A., Douda J., Krak K., Vít P., Hadincová V., Zákravský P. & Mandák B. (2015): Higher genetic diversity in recolonized areas than in refugia in Alnus glutinosa triggered by continental-wide lineage admixture. Molecular Ecology 24(18): 4759K–4777.
Mandák B., Vít P., Krak K., Trávníček P., Havrdová A., Hadincová V., Zákravský P., Jarolímová V., Bacles CF & Douda J. (2016): Flow cytometry, microsatellites and niche models reveal the origins and geographical structure of Alnus glutinosa populations in Europe. Annals of Botany 117(1):107–120.
Vítová J., Vít P. & Suda J. (2015): Rare occurrence of reciprocal hybridization in a sympatric population of the Czech stenoendemic Dianthus arenarius subsp. bohemicus and widespread D. carthusianorum. Preslia 87: 329–345.
Zozomová-Lihová J., Malánová-Krásná I., Vít P., Urfus T., Senko D., Svitok M., Kempa M. & Marhold K. (2015): Cytotype distribution patterns, ecological differentiation, and genetic structure in a diploid–tetraploid contact zone of Cardamine amara. American Journal of Botany 102(8): 1380–1395.
Vít P., Šingliarová B., Zozomová-Lihová J., Marhold K. & Krak K. (2015): Microsatellite Markers for the Pilosella alpicola Group (Hieraciinae, Asteraceae) and Their Cross-Amplification in Other Hieraciinae Genera. Applications in Plant Sciences 3(8): 1500048.
Lepší M., Lepší P., Koutecký P., Bílá J. & Vít P. (2015): Taxonomic revision of Sorbus subgenus Aria occurring in the Czech Republic. Preslia 87: 109–162.
Hand M., Vít P., Krahulcová A., Johnson S. D., Oelkers K., Siddons H., Chrtek J., Fehrer J. & Koltunow A. M. G. (2015): Evolution of apomixis loci in Pilosella and Hieracium (Asteraceae) inferred from the conservation of apomixis-linked markers in natural and experimental populations. Heredity 114: 17–26.
2014
Businský R., Frantík T. & Vít P. (2014): Morphological evaluation of the Pinus kesiya complex (Pinaceae). Plant Systematics and Evolution 300: 273–285.
Douda J., Doudová J., Drašnarová A., Kuneš P., Hadincová V., Krak K., Zákravský P. & Mandák B. (2014): Migration patterns of subgenus Alnus in Europe since the Last Glacial Maximum. A systematic review. PLoS ONE 9(2): e88709. doi:10.1371/journal.pone.0088709.
Drašnarová A., Krak K., Vít P., Doudová J., Douda J., Hadincová V., Zákravský P. & Mandák B. (2014): Cross-amplification and multiplexing of SSR markers for Alnus glutinosa and A. incana. Tree Genetics & Genomes 10: 865–873.
Eliášová A., Trávníček P., Mandák B. & Münzbergová Z. (2014): Autotetraploids of Vicia cracca show a higher allelic richness in natural populations and a higher seed set after artificial selfing than diploids. Annals of Botany 113: 159–170.
Hanušová K., Ekrt L., Vít P., Kolář F. and Urfus T. (2014): Continuous morphological variation correlated with genome size indicates frequent introgressive hybridization among Diphasiastrum species (Lycopodiaceae) in Central Europe. Plos One 9: e99552.
Kabátová K., Vít P., & Suda J. (2014): Species boundaries and hybridization in Central-European Nymphaea species inferred from genome size and morphometric data. Preslia 86: 131–154.
Vít P., Wolfová K., Urfus T., Tájek P. & Suda J. (2014): Interspecific hybridization between rare and common plant congeners inferred from genome size data: assessing the threat to the Czech serpentine endemic Cerastium alsinifolium (Caryophyllaceae). Preslia 86: 95–117.
Zozomová-Lihová J., Krak K., Mandáková T., Shimizu K. K., Spaniel S., Vít P. & Lysák M. A. (2014): Multiple hybridization events in Cardamine (Brassicaceae) during the last 150 years: revisiting a textbook example of neoallopolyploidy. Annals of Botany 113: 817–830.
2013
Douda J. (2013): Alder and willow carrs, Alnetea glutinosae. In: Chytrý M. (ed.): Vegetation of the Czech Republic 4. Forest and Scrub Vegetation. Academia, Praha, pp. 166–192. (in Czech with English summary)
Douda J. (2013): Broad-leaved floodplain forests, Alnion incanae. In: Chytrý M. (ed.): Vegetation of the Czech Republic 4. Forest and Scrub Vegetation. Academia, Praha, pp. 198–219. (in Czech with English summary)
Janoušková M., Krak K., Wagg C., Štorchová H., Caklová P. & Vosátka M. (2013): Effects of inoculum additions in the presence of a preestablished arbuscular mycorrhizal fungal community. Applied and Environmental Microbiology 79: 6507–6515.
Kolář F., Lučanová M., Vít P., Urfus T., Chrtek J., Fér T., Ehrendorfer F. & Suda J. (2013): Diversity and endemism in deglaciated areas: ploidy, relative genome size and niche differentiation in the Galium pusillum complex (Rubiaceae) in Northern and Central Europe. Annals of Botany 111: 1095e–1108.
Krak K., Caklová P., Chrtek J. & Fehrer J. (2013): Reconstruction of phylogenetic relationships in a highly reticulate group with deep coalescence and recent speciation (Hieracium, Asteraceae). Heredity 110: 138–151.
Krejčíková J., Sudová R., Lučanová M., Trávníček P., Urfus T., Vít P., Weiss-Schneeweiss H., Kolano B., Oberlander K., Dreyer L. L. & Suda J. (2013): High ploidy diversity and distinct patterns of cytotype distribution in a widespread species of Oxalis in the Greater Cape Floristic Region. Annals of Botany 111: 641–649.
Lepší M., Lepší P. & Vít P. (2013): Sorbus quernea: taxonomic confusion caused by the naturalization of an alien species, Sorbus mougeotii. Preslia 85: 159–178.
Mandák B., Hadincová V., Mahelka V. & Wildová R. (2013): European invasion of North American Pinus strobus at large and fine scales: high genetic diversity and fine-scale genetic clustering over time in the adventive range. PLoS ONE 8(7): e68514. doi:10.1371/journal.pone.0068514
Neuhäuslová Z., Douda J. & Chytrý M. (2013): Riparian willow scrub and willow-poplar forests, Salicetea purpureae. In: Chytrý M. (ed.): Vegetation of the Czech Republic 4. Forest and Scrub Vegetation. Academia, Praha, pp. 45–72. (in Czech with English summary)
Svoboda M., Janda P., Bače R., Fraver S., Nagel T.A., Rejzek J., Mikoláš M., Douda J., Boublík K., Šamonil P., Čada V., Trotsiuk V., Teodosiu M., Bouriaud O., Biriş A.I., Sýkora O., Uzel P., Zelenka J., Sedlák V. & Lehejček J. (2013): Landscape-level variability in historical disturbance in primary Picea abies mountain forests of the Eastern Carpathians, Romania. Journal of Vegetation Science 25: 386–401.
2012
Douda J., Doudová-Kochánková J., Boublík K. & Drašnarová A. (2012): Plant species coexistence at local scale in temperate swamp forest: test of habitat heterogeneity hypothesis. Oecologia 169: 523–534.
Doudová-Kochánková J., Plačková I., Zákravský P., Flégrová M. & Mandák B. (2012): The importance of phenotypic differentiation and plasticity in the range expansion of the annual Atriplex tatarica (Amaranthaceae). Flora 207: 744–752.
Krak K., Álavarez I., Caklová P., Costa A., Chrtek J. & Fehrer J. (2012): Development of novel low-copy nuclear markers for Hieraciinae (Asteraceae) and their perspective for other tribes. American Journal of Botany e74–e77.
Krak K., Janoušková M., Caklová P., Vosátka M. & Štorchová H. (2012): Intraradical dynamics of two coexisting isolates of the arbuscular mycorrhizal fungus Glomus intaradices sensu lato as estimated by real-time PCR in mitochondrial DNA. Applied and Environmental Microbiology 78: 3630s–3637.
Mandák B., Trávníček P., Paštová L. & Kořínková D. (2012): Is hybridization involved in the evolution of the Chenopodium album aggregate? An analysis based on chromosome counts and genome size estimation. Flora 207: 530–540.
Mandák B., Zákravský P., Mahelka V. & Plačková I. (2012): Can soil seed banks serve as genetic memory? A study of three species with contrasting life history strategies. PLoS ONE 7(11): e49471. doi:10.1371/journal.pone.0049471.
Vít P., Lepší M. & Lepší P. (2012): There is no diploid apomict among Czech Sorbus species: a biosystematic revision of S. eximia and discovery of S. barrandienica. Preslia 84: 71–96.
Záveská E., Fér T., Šída O., Krak K., Marhold K. & Leong-Škorničková J. (2012): Phylogeny of Curcuma (Zingiberaceae) based on plastid and nuclear sequences: Proposal of the new subgenus Ecomata. Taxon 61: 747–763.
2011
Horandl E., Dobeš C., Suda J., Vít P., Urfus T., Temsch E. M., Consedai A-C., Wagner J. & Laidinig U. (2011): Apomixis is not prevalent in subnival to nival plants of the European Alps. Annals of Botany 108: 381–390.
Mandák B., Zákravský P., Dostál P. & Plačková I. (2011): Population genetic structure of the noxious weed Amaranthus retroflexus in Central Europe. Flora 206: 697–703.
2010
Douda J. (2010): The role of landscape configuration in plant composition of floodplain forests across different physiographic areas. Journal of Vegetation Science 21: 1110–1124.
Loureiro J., Trávníček P., Rauchová J., Urfus T., Vít P., Štech M., Castro S. & Suda J. (2010): The use of flow cytometry in the biosystematics, ecology and population biology of homoploid plants. Preslia 82: 3–21.
Suda J., Trávníček P., Mandák B. & Berchová-Bímová K. (2009): Genome size as a marker for identifying the invasive alien taxa in Fallopia section Reynoutria. Preslia 82: 97–106.
2009
Bailey J. P., Bímová K. & Mandák B. (2009): Asexual spread versus sexual reproduction and evolution in Japanese Knotweed s.l. sets the stage for the “Battle of the Clones”. Biological Invasions 11: 1189–1203.
Chrtek J., Zahradníček J., Krak K. & Fehrer J. (2009): Genome size in Hieracium subgenus Hieracium (Asteraceae) is strongly correlated with major phylogenetic groups. Annals of Botany 104: 161–178.
Douda J., Čejková A., Douda K. & Kochánková J. (2009): Development of alder carr after the abandonment of wet grasslands during the last 70 years. Annals of Forest Science 66: 1–13.
Ekrt L., Trávníček P., Jarolímová V., Vít P. & Urfus T. (2009): Genome size and morphology of the Dryopteris affinis group in Central Europe. Preslia 81: 261–280.
Fehrer J., Krak K. & Chrtek J. (2009): Intra-individual polymorphism in diploid and apomictic polyploidy hawkweeds (Hieracium, Lactuceae, Asteraceae): disentangling phylogenetic signal, reticulation, and noise. BMC Evolutionary Biology 9: 239.
Kochánková J. & Mandák B. (2009): How do population genetic parameters affect germination of the heterocarpic species Atriplex tatarica (Amaranthaceae)? Annals of Botany 103: 1303–1313.
Kolář F., Štech M., Trávníček P., Rauchová J., Urfus T., Vít P., Kubešová M., & Suda J. (2009): Towards resolving the Knautia arvensis agg. (Dipsacaceae) puzzle: primary and secondary contact zones and ploidy segregation at landscape and microgeographic scales. Annals of Botany 103: 963–974.
Lepší M., Vít P., Lepší P., Boublík K., & Kolář F. (2009): Sorbus portae-bohemicae and Sorbus albensis, two new endemic apomictic species recognized based on a revision of Sorbus bohemica. Preslia 81: 63–68.
Mandák B. & Plačková I. (2009): How does population genetic diversity change over time? An experimental seed bank study of Atriplex tatarica (Chenopodiaceae). Flora 204: 423–433.
Mandák B., Zákravský P., Kořínková D., Dostál P. & Plačková I. (2009): Low population differentiation and high genetic diversity in the invasive species Carduus acanthoides L. (Asteraceae) within its native range in the Czech Republic. Biological Journal of the Linnean Society 98: 596–607.
Slovák M., Vít P., Urfus T. & Marhold K. (2009): The Balkan endemic Picris hispidissima (Compositae): morphology, nuclear DNA content and relationship to the polymorphic P. hieracioides. Plant Systematics and Evolution 278: 187–201.
Slovák M., Vít P., Urfus T. & Suda J. (2009): Complex pattern of genome size variation in the polymorphic species Picris hieracioides (Compositae). Journal of Biogeography 39: 372–384.
Suda J., Loureiro J., Trávníček P., Rauchová J., Vít P., Urfus T., Kubešová M., Dreyer L. L., Oberlander K. C., Wester P. & Roets F. (2009): Flow cytometry and its applications in plant population biology, ecology and biosystematics: New prospects for the Cape flora. South African Journal of Botany 75: 389–389.
2008
Douda J. (2008): Formalized classification of the vegetation of alder carr and floodplain forests in the Czech Republic. Preslia 80: 199–224.
Kochánková J. & Mandák B. (2008): Biological flora of Central Europe: Atriplex tatarica L. Perspectives in Plant Ecology, Evolution and Systematics 10: 217–229.
Lepší M., Vít P., Lepší P., Boublík K., & Suda J. (2008): Sorbus milensis, a new hybridogenous species from northwestern Bohemia. Preslia 80: 229–244
Šamonil P., Král K., Douda J. & Šebková B. (2008): Variability in forest floor at different spatial scales in a natural forest in the Carpathians: effect of windthrows and mesorelief. Canadian Journal of Forest Research 38: 2596–2606.
Šamonil P., Šebková B., Douda J. & Vrška T. (2008): Role of position within the windthrow in forest floor chemistry in the flysch zone of the Carpathians. Canadian Journal of Forest Research 38: 1646–1660.
2007
Bailey J. P., Bímová K. & Mandák B. (2007): The potential role of polyploidy and hybridisation in the further evolution of the highly invasive Fallopia taxa in Europe. Ecological Research 22: 920–928.
2006
Mandák B., Bímová K. & Plačková I. (2006): Genetic structure of experimental populations and reproductive fitness in a heterocarpic plant Atriplex tatarica (Chenopodiaceae). American Journal of Botany 93: 1640–1649.
Mandák B., Bímová K., Mahelka V. & Plačková I. (2006): How much genetic variation is stored in the seed bank? A study of Atriplex tatarica (Chenopodiaceae). Molecular Ecology 15: 2653–2663.
2005
Mandák B. & Pyšek P. (2005): How does seed heteromorphism influence the life history stages of Atriplex sagittata (Chenopodiaceae)? – Flora 200: 516t–526.
Mandák B., Bímová K., Plačková I., Mahelka V. & Chrtek J. (2005): Loss of genetic variation in geographically marginal populations of Atriplex tatarica (Chenopodiaceae). Annals of Botany 96: 901–912.
Mandák B., Bímová K., Pyšek P., Štěpánek J. & Plačková I. (2005): Isoenzyme diversity in Reynoutria taxa: escape from sterility by hybridization. Plant Systematics and Evolution 253: 219–230.
2004
Bímová K., Mandák B. & Kašparová I. (2004): How does Reynoutria invasion fit the various theories of invasibility? i– Journal of Vegetation Science 15: 495–504.
Herben T., Mandák B., Bímová K. & Münzbergová Z. (2004): Invasibility and species richness of a community: A neutral model and a survey of published data. Ecology 85: 3223–3233.
Mandák B. & Holmanová Š. (2004): The effect of fruit age on seed germinability of a heterocarpic species, Atriplex sagittata. Plant Biology 6: 715v–720.
Mandák B., Pyšek P. & Bímová K. (2004): History of the invasion and distribution of Reynoutria taxa in the Czech Republic: a hybrid spreading faster than its parents. Preslia 76: 15–64.
2003
Bímová K., Mandák B. & Pyšek P. (2003): Experimental study of vegetative regeneration in four invasive Reynoutria taxa (Polygonaceae). Plant Ecology 166: 1–11.
Mandák B. (2003): Distribution of four Atriplex species with different degrees of invasiveness in the Czech Republic. In: Child L. E., Brock J. H., Brundu G., Prach K., Pyšek P., Wade P. M. & Williamson M. (eds.), Plant Invasions: Ecological Threats and Management Solutions, pp. 313–328, Backhuys Publisher, Leiden, The Netherlands.
Mandák B. (2003): Germination requirements of invasive and non-invasive Atriplex species: a comparative study. Flora 198: 45–54.
Mandák B., Pyšek P., Lysák M., Suda J., Krahulcová A. & Bímová K. (2003): Variation in DNA-ploidy levels of Reynoutria taxa in the Czech Republic. Annals of Botany 92: 265–272.
Pyšek P., Brock J. H., Bímová K., Mandák B., Jarošík V., Koukolíková I., Pergl J. & Štěpánek J. (2003): Vegetative regeneration in invasive Reynoutria (Polygonaceae) taxa: the determinant of invasibility at the genotype level. American Journal of Botany 90: 1487–1495.
Pyšek P., Sádlo J., Mandák B. & Jarošík V. (2003): Czech alien flora and historical pattern of its formation: what came first to Central Europe? Oecologia 135: 122–130.
2002
Pyšek P., Sádlo J. & Mandák B. (2002): Catalogue of alien plants of the Czech Republic. Preslia 74: 97–186.
2001
Mandák B. & Pyšek P. (2001): Fruit dispersal and seed banks in Atriplex sagittata: the role of heterocarpy. Journal of Ecology 89: 159–165.
Mandák B. & Pyšek P. (2001): The effects of light quality, nitrate concentration and presence of bracteoles on germination of different fruit types in the heterocarpous Atriplex sagittata. Journal of Ecology 89: 149–158.
1999
Mandák B. & Pyšek P. (1999): Effects of plant density and nutrient levels on fruit polymorphism in Atriplex sagittata. Oecologia 119: 63–72.
Mandák B. & Pyšek P. (1999): How does density-nutrient stress affect allometry and fruit production in the heterocarpic species Atriplex sagittata (Chenopodiaceae)? Canadian Journal of Botany 77: 1106–1119.